Microwave discharge neutralizer is an important part of microwave discharge ion thruster system, which plays a vital role in maintaining potential balance between spacecraft and neutralizing ion beam. Its electron extraction property directly affects the operation condition of ion thruster system. In order to break through the power limit of miniature microwave discharge ion thruster, a magnet array microwave discharge ion thruster system is designed and tested. In the experiment on finalizing magnetic field structure of magnet array microwave discharge neutralizer, an interesting phenomenon is found that the I- Vcurves of electron current, after rotating the magnetic array orientation, are very different. Defining forward direction of magnet array can normally extract electrons, then backward direction of magnet array can hardly extract electrons. Because the diameter of discharge chamber is only 10 mm, it is too small to perform Langmuir probe diagnosis. And thus, an integrative particle-in-cell method is used to simulate the neutralizer operation processes of two different magnetic field structures, and for the sake of accuracy, real vacuum permittivity is used. The simulation results show good consistence with experimental phenomenon. In the initial discharge process, it is found that the magnetic field gradient leads to different plasma distributions; in electron extraction process, it is found that the potential distribution near the orifice determines the electron extraction property of the neutralizer. Through comparing the plasma parameter distributions under different magnetic field structures and operating voltages, an assumption that the ion is an important factor in electron extraction process is proposed. Then, a simulation that ions disappear artificially outside the orifice is conducted, and the simulation results show that electrons cannot be effectively extracted without ions near the orifice. According to the simulation and experiment results, two necessary conditions are summarized for electron extraction of the neutralizer. The first condition is magnetic field structure: the magnetic field gradient should point towards the orifice to guide plasma migration towards the orifice, the second one is potential distribution: there should be enough ions to lift the potential near the orifice for reducing or breaking the potential well. These two conditions can help understand the electron extraction mechanism of microwave discharge neutralizer and provide theoretical reference for optimizing the performance of neutralizer in future.