Heat transport is one of the most important research topics in physics. Especially in recent years, with the in depth study on single-molecule devices, heat transport in low-dimensional (i.e. one- and two-dimensional) microsystems has received more and more attention. In the research of Fermi-Pasta-Ulam crystals and harmonic crystals, it is widely accepted that heat conduction in low-dimensional system does not follow Fourier’s law. Due to the lack of the equipment that can directly measure heat current, it has been proven to be a challenging task to carry out relevant experiments. Ion crystal in ion trap is located in vacuum and does not exchange energy with the external environment. The crystal structure and temperature can be accurately controlled by electric field and optical field, providing an ideal experimental platform for studying thermal conduction in low-dimensional crystals in classical state or quantum state. Herein we summarize the recent theoretical research on thermal conduction in ion crystals, including the methods of calculating temperature distribution and steady-state heat current in one-dimensional, two-dimensional, and three-dimensional models, as well as the characteristics of heat current and temperature distribution under different ion crystal configurations. Because the nonlinear effect caused by the imbalance among three dimensions hinders the heat transport, the heat current in ion crystal is largest in the linear configuration while smallest in the zig-zag configuration. In addition, we also introduce the influence of disorder on the thermal conductivity of ion crystal, including the influence on the heat current across various ion crystal configurations such as the linear, the zig-zag and the helical configuration. Notably, the susceptibility of ion crystal to disorder increases with crystal size increasing. Specifically, the zig-zag ion crystal configuration exhibits the largest susceptibility to disorder, whereas the linear configuration is least affected. Finally, we provide a concise overview of experimental studies of the heat conduction in low-dimensional systems. Examination of the heat conduction in ion crystal offers a valuable insight into various cooling techniques employed in ion trap systems, including sympathetic cooling, electromagnetically induced transparency cooling, and polarization gradient cooling. Just like macroscopic thermal diodes made by thermal metamaterials, it is possible that the microscopic thermal diodes can also be made in low-dimensional systems.