The realization of Bose-Einstein condensation in dilute atomic gases opens an exciting way to quantum mechanics and begins a new area of quantum simulation. As a macroscopic quantum object and a many-body bosonic system, the Bose-Einstein condensates can show numerous exotic quantum effects and have naturally attracted great attention. One of the simplest quantum many-body systems to be realized experimentally and studied theoretically is ultra-cold atoms in a double-well potential. This system can exhibit a great variety of quantum interference phenomena such as tunneling oscillation, self-trapping and the entanglement of macroscopic superpositions. Specifically, the double-well potentials built by optical or magnetic fields are easy to change and the many-body interaction between ultra-cold atoms can be changed by the method of Feshbach resonance, enabling the precise quantum control of the double-well dynamics of the condensates. In the present work, we study the dynamics of a condensate in a trapping potential consisting of an unalterable double-well trap and an additional moving optical lattice. If the lattice space is much smaller than the size of the double-well trap, the system can be simplified into a double-well trapped condensate with a tunable effective mass. Using the mean-field factorization assumption, together with a two-mode approximation, we obtain the analytic expressions for the dependence of the tunneling rate and the self-collision strength on the effective mass. The tunneling rate decays and the collision strength grows up with the increase of the effective mass. As a consequence of their different changes, we conclude that the adjustment of the effective mass of the ultra-cold atoms, rather than the changing of the trap barrier or adjusting of the atomic scattering length, is an alternative approach to controlling the double-well dynamics of the condensate. Via numerical simulations of the mean-field dynamical equations with some realistic parameters, we show that a transition between the quantum coherent tunneling and the self-trapping behaviors is experimentally realizable with the mass-control approach. Specifically, we show that the approach is still valid for the case of negative mass. Moreover, we find that the negative-mass case can be used even to stimulate the double-well dynamics of the condensate with a negative atomic scattering length.